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mpich package update 

Signed-off-by: basebuilder_pel7ppc64bebuilder0 <basebuilder@powerel.org>
master
basebuilder_pel7ppc64bebuilder0 7 years ago
parent
7dece20217
commit
d4b4e249f8
12 changed files with 1328 additions and 0 deletions
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  1. 29
      SOURCES/0001-Revert-require-automake-1.15.patch
  2. 163
      SOURCES/0001-hydra-improve-localhost-detection.patch
  3. 32
      SOURCES/0001-pm-remshell-include-MPL-when-linking.patch
  4. 228
      SOURCES/0002-Revert-require-libtool-2.4.3.patch
  5. 13
      SOURCES/0002-pm-gforker-include-MPL-when-linking.patch
  6. 13
      SOURCES/0003-soften-version-check.patch
  7. 48
      SOURCES/0003-unbundle-YAML-Tiny.patch
  8. 119
      SOURCES/0004-unbundle-hwloc-from-hydra.patch
  9. 116
      SOURCES/mpich-3.0.4-rh.patch
  10. 7
      SOURCES/mpich.macros.in
  11. 20
      SOURCES/mpich.module.in
  12. 540
      SPECS/mpich.spec

29
SOURCES/0001-Revert-require-automake-1.15.patch
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@ -0,0 +1,29 @@
From fce385fb31b7faed0ab01834831a920a66073807 Mon Sep 17 00:00:00 2001
From: Michal Schmidt <mschmidt@redhat.com>
Date: Tue, 21 Jun 2016 17:18:51 +0200
Subject: [PATCH 1/4] Revert "require automake >= 1.15"

This reverts commit 67577443f839be953e7c9c9dfd53c06cbd08525f
to allow re-running automake in RHEL7.
The reverted commit suggests that the newer automake was needed on Tru64,
which does not concern us.
---
autogen.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/autogen.sh b/autogen.sh
index 5370dbf32d..bc33139189 100755
--- a/autogen.sh
+++ b/autogen.sh
@@ -506,7 +506,7 @@ fi
echo_n "Checking for automake version... "
recreate_tmp
-ver=1.15
+ver=1.12.3
cat > .tmp/configure.ac<<EOF
AC_INIT(testver,1.0)
AC_CONFIG_AUX_DIR([m4])
--
2.7.4

163
SOURCES/0001-hydra-improve-localhost-detection.patch
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@ -0,0 +1,163 @@
From 305dad8388ea27b4d1bf1202e90ad6947ae0ab26 Mon Sep 17 00:00:00 2001
From: Pavan Balaji <balaji@anl.gov>
Date: Thu, 21 Jan 2016 17:01:42 -0600
Subject: [PATCH] hydra: improve localhost detection.

Be more forgiving for systems that do not resolve "localhost" or
equivalent names very well (e.g., they are not added to /etc/hosts).
Try them out, and if nothing works, fallback to "is not local" mode.

Thanks to Orion Poplawski <orion@cora.nwra.com> for the suggestion.
---
src/pm/hydra/utils/sock/sock.c | 89 +++++++++++++++++++++++-------------------
1 file changed, 48 insertions(+), 41 deletions(-)

diff --git a/src/pm/hydra/utils/sock/sock.c b/src/pm/hydra/utils/sock/sock.c
index 86b25077aac2..dc56c767f544 100644
--- a/src/pm/hydra/utils/sock/sock.c
+++ b/src/pm/hydra/utils/sock/sock.c
@@ -492,7 +492,7 @@ HYD_status HYDU_sock_get_iface_ip(char *iface, char **ip)
HYD_status HYDU_sock_is_local(char *host, int *is_local)
{
struct hostent *ht;
- char *host_ip = NULL, *local_ip = NULL, *lhost_ip = NULL;
+ char *host_ip = NULL, *lhost_ip = NULL;
char lhost[MAX_HOSTNAME_LEN];
struct sockaddr_in sa;
struct ifaddrs *ifaddr, *ifa;
@@ -516,54 +516,63 @@ HYD_status HYDU_sock_is_local(char *host, int *is_local)
/* STEP 1: If "host" matches the local host name, return */
if (gethostname(lhost, MAX_HOSTNAME_LEN) < 0) {
- HYDU_ERR_SETANDJUMP(status, HYD_INTERNAL_ERROR, "gethostname returned an error\n");
+ /* We can't figure out what my localhost name is. *sigh*. We
+ * could return an error here, but we will just punt it to the
+ * upper layer saying that we don't know if it is local. We
+ * cannot try steps 2 and 3 either, since we don't have our
+ * local hostname. */
+ goto fn_exit;
}
else if (!strcmp(lhost, host)) {
*is_local = 1;
goto fn_exit;
}
+ else {
+ /* we have our local hostname, but that does not match the
+ * provided hostname. Let's try to get our remote IP address
+ * first. If we can't get that, we can give up. */
+ /* If we are unable to resolve the remote host name, it need
+ * not be an error. It could mean that the user is using an
+ * alias for the hostname (e.g., an ssh config alias) */
+ if ((ht = gethostbyname(host)) == NULL)
+ goto fn_exit;
+ memset((char *) &sa, 0, sizeof(struct sockaddr_in));
+ memcpy(&sa.sin_addr, ht->h_addr_list[0], ht->h_length);
- /* STEP 2: If the IP address associated with "host" and the IP address local
- * host resolves to match, return */
-
- if ((ht = gethostbyname(lhost)) == NULL) {
- HYDU_ERR_SETANDJUMP(status, HYD_INTERNAL_ERROR, "gethostbyname error on %s: %s\n",
- lhost, hstrerror(h_errno));
+ /* Find the IP address of the host */
+ host_ip = HYDU_strdup((char *) inet_ntop(AF_INET, (const void *) &sa.sin_addr, buf,
+ MAX_HOSTNAME_LEN));
+ HYDU_ASSERT(host_ip, status);
}
- memset((char *) &sa, 0, sizeof(struct sockaddr_in));
- memcpy(&sa.sin_addr, ht->h_addr_list[0], ht->h_length);
-
- /* Find the IP address of the host */
- lhost_ip = HYDU_strdup((char *) inet_ntop(AF_INET, (const void *) &sa.sin_addr, buf,
- MAX_HOSTNAME_LEN));
- HYDU_ASSERT(lhost_ip, status);
+ /* OK, if we are here, we got the remote IP. We have two ways of
+ * getting the local IP: gethostbyname or getifaddrs. We'll try
+ * both. */
- /* If we are unable to resolve the remote host name, it need not be an
- * error. It could mean that the user is using an alias for the hostname
- * (e.g., an ssh config alias) */
- if ((ht = gethostbyname(host)) == NULL)
- goto fn_exit;
+ /* STEP 2: Let's try the gethostbyname model */
- memset((char *) &sa, 0, sizeof(struct sockaddr_in));
- memcpy(&sa.sin_addr, ht->h_addr_list[0], ht->h_length);
+ if ((ht = gethostbyname(lhost))) {
+ memset((char *) &sa, 0, sizeof(struct sockaddr_in));
+ memcpy(&sa.sin_addr, ht->h_addr_list[0], ht->h_length);
- /* Find the IP address of the host */
- host_ip = HYDU_strdup((char *) inet_ntop(AF_INET, (const void *) &sa.sin_addr, buf,
- MAX_HOSTNAME_LEN));
- HYDU_ASSERT(host_ip, status);
+ /* Find the IP address of the host */
+ lhost_ip = HYDU_strdup((char *) inet_ntop(AF_INET, (const void *) &sa.sin_addr, buf,
+ MAX_HOSTNAME_LEN));
+ HYDU_ASSERT(lhost_ip, status);
- /* See if the IP address of the hostname we got matches the IP address
- * to which the local host resolves */
- if (!strcmp(lhost_ip, host_ip)) {
- *is_local = 1;
- goto fn_exit;
+ /* See if the IP address of the hostname we got matches the IP
+ * address to which the local host resolves */
+ if (!strcmp(lhost_ip, host_ip)) {
+ *is_local = 1;
+ goto fn_exit;
+ }
}
+ /* Either gethostbyname didn't resolve or we didn't find a match.
+ * Either way, let's try the getifaddr model. */
- /* STEP 3: Find all local IP addresses and try to match the host IP
- * with it. */
+ /* STEP 3: Let's try the getifaddr model */
if (getifaddrs(&ifaddr) == -1)
HYDU_ERR_SETANDJUMP(status, HYD_INTERNAL_ERROR, "getifaddrs failed\n");
@@ -573,21 +582,21 @@ HYD_status HYDU_sock_is_local(char *host, int *is_local)
if (ifa->ifa_addr && ifa->ifa_addr->sa_family == AF_INET) {
struct sockaddr_in *sa_ptr = (struct sockaddr_in *) ifa->ifa_addr;
- local_ip = HYDU_strdup((char *)
+ lhost_ip = HYDU_strdup((char *)
inet_ntop(AF_INET, (const void *) &(sa_ptr->sin_addr), buf,
MAX_HOSTNAME_LEN));
- HYDU_ASSERT(local_ip, status);
+ HYDU_ASSERT(lhost_ip, status);
- /* STEP 3: For each local IP address, see if it matches the "host"
+ /* For each local IP address, see if it matches the "host"
* IP address */
- if (!strcmp(host_ip, local_ip)) {
+ if (!strcmp(host_ip, lhost_ip)) {
*is_local = 1;
freeifaddrs(ifaddr);
goto fn_exit;
}
- HYDU_FREE(local_ip);
- local_ip = NULL;
+ HYDU_FREE(lhost_ip);
+ lhost_ip = NULL;
}
}
@@ -596,8 +605,6 @@ HYD_status HYDU_sock_is_local(char *host, int *is_local)
fn_exit:
if (host_ip)
HYDU_FREE(host_ip);
- if (local_ip)
- HYDU_FREE(local_ip);
if (lhost_ip)
HYDU_FREE(lhost_ip);
return status;
--
1.9.1

32
SOURCES/0001-pm-remshell-include-MPL-when-linking.patch
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From d3d7f0d571607c3547396045093c77364cfaec0b Mon Sep 17 00:00:00 2001
From: Ken Raffenetti <raffenet@mcs.anl.gov>
Date: Fri, 28 Aug 2015 14:28:37 -0700
Subject: [PATCH] pm/remshell: include MPL when linking

---
src/pm/remshell/Makefile.mk | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/pm/remshell/Makefile.mk b/src/pm/remshell/Makefile.mk
index ea366a9e..0ec937d9 100644
--- a/src/pm/remshell/Makefile.mk
+++ b/src/pm/remshell/Makefile.mk
@@ -16,13 +16,13 @@ if BUILD_PM_REMSHELL
if PRIMARY_PM_REMSHELL
bin_PROGRAMS += src/pm/remshell/mpiexec
src_pm_remshell_mpiexec_SOURCES = src/pm/remshell/mpiexec.c
-src_pm_remshell_mpiexec_LDADD = src/pm/util/libmpiexec.a
+src_pm_remshell_mpiexec_LDADD = src/pm/util/libmpiexec.a $(mpllib)
# we may not want to add AM_CPPFLAGS for this program
src_pm_remshell_mpiexec_CPPFLAGS = $(common_pm_includes) $(AM_CPPFLAGS)
else !PRIMARY_PM_REMSHELL
bin_PROGRAMS += src/pm/remshell/mpiexec.remshell
src_pm_remshell_mpiexec_remshell_SOURCES = src/pm/remshell/mpiexec.c
-src_pm_remshell_mpiexec_remshell_LDADD = src/pm/util/libmpiexec.a
+src_pm_remshell_mpiexec_remshell_LDADD = src/pm/util/libmpiexec.a $(mpllib)
# we may not want to add AM_CPPFLAGS for this program
src_pm_remshell_mpiexec_remshell_CPPFLAGS = $(common_pm_includes) $(AM_CPPFLAGS)
endif !PRIMARY_PM_REMSHELL
--
1.9.1

228
SOURCES/0002-Revert-require-libtool-2.4.3.patch
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@ -0,0 +1,228 @@
From 7a9b12d8c8d2fdb2906f941fab9853e39883d381 Mon Sep 17 00:00:00 2001
From: Michal Schmidt <mschmidt@redhat.com>
Date: Tue, 21 Jun 2016 17:26:49 +0200
Subject: [PATCH 2/4] Revert "require libtool >= 2.4.3"

This reverts commit b21dc461115bdf99d42176ecea8e8efc763d8a2d.
---
autogen.sh | 31 +++++-
maint/0001-libtool-powerpc-le-linux-support.patch | 111 ++++++++++++++++++++++
maint/darwin-ifort.patch | 8 +-
maint/libtool.m4.patch | 11 +++
4 files changed, 155 insertions(+), 6 deletions(-)
create mode 100644 maint/0001-libtool-powerpc-le-linux-support.patch
create mode 100644 maint/libtool.m4.patch

diff --git a/autogen.sh b/autogen.sh
index bc33139189..8a8ccd90f2 100755
--- a/autogen.sh
+++ b/autogen.sh
@@ -544,7 +544,7 @@ fi
echo_n "Checking for libtool version... "
recreate_tmp
-ver=2.4.3
+ver=2.4
cat <<EOF >.tmp/configure.ac
AC_INIT(testver,1.0)
AC_CONFIG_AUX_DIR([m4])
@@ -924,6 +924,33 @@ if [ "$do_build_configure" = "yes" ] ; then
# Older versions are not supported to build mpich.
# Newer versions should have this patch already included.
if [ -f $amdir/confdb/libtool.m4 ] ; then
+ echo_n "Patching libtool.m4 to enable support for powerpcle... "
+ powerpcle_patch_requires_rebuild=no
+ patch -N -s -l $amdir/confdb/libtool.m4 maint/0001-libtool-powerpc-le-linux-support.patch
+ if [ $? -eq 0 ] ; then
+ powerpcle_patch_requires_rebuild=yes
+ # Remove possible leftovers, which don't imply a failure
+ rm -f $amdir/confdb/libtool.m4.orig
+ echo "done"
+ else
+ echo "failed"
+ fi
+
+ # There is no need to patch if we're not going to use Fortran.
+ nagfor_patch_requires_rebuild=no
+ if [ $do_bindings = "yes" ] ; then
+ echo_n "Patching libtool.m4 for compatibility with nagfor shared libraries... "
+ patch -N -s -l $amdir/confdb/libtool.m4 maint/libtool.m4.patch
+ if [ $? -eq 0 ] ; then
+ nagfor_patch_requires_rebuild=yes
+ # Remove possible leftovers, which don't imply a failure
+ rm -f $amdir/confdb/libtool.m4.orig
+ echo "done"
+ else
+ echo "failed"
+ fi
+ fi
+
# There is no need to patch if we're not going to use Fortran.
ifort_patch_requires_rebuild=no
if [ $do_bindings = "yes" ] ; then
@@ -939,7 +966,7 @@ if [ "$do_build_configure" = "yes" ] ; then
fi
fi
- if [ $ifort_patch_requires_rebuild = "yes" ] ; then
+ if [ $powerpcle_patch_requires_rebuild = "yes" -o $nagfor_patch_requires_rebuild = "yes" -o $ifort_patch_requires_rebuild = "yes" ] ; then
# Rebuild configure
(cd $amdir && $autoconf -f) || exit 1
# Reset libtool.m4 timestamps to avoid confusing make
diff --git a/maint/0001-libtool-powerpc-le-linux-support.patch b/maint/0001-libtool-powerpc-le-linux-support.patch
new file mode 100644
index 0000000000..52e122ac27
--- /dev/null
+++ b/maint/0001-libtool-powerpc-le-linux-support.patch
@@ -0,0 +1,111 @@
+From 723f678b8f297544b64880c8d80b60328e82cb45 Mon Sep 17 00:00:00 2001
+From: Alan Modra <amodra@bigpond.net.au>
+Date: Thu, 6 Jun 2013 14:48:22 +0930
+Subject: [PATCH] libtool: powerpc*le-linux support
+
+This is a combination of 5 commits.
+
+See libtool version 2.4.2.418
+http://git.savannah.gnu.org/cgit/libtool.git/log/?h=v2.4.2.418
+
+==========================================================================
+
+ commit 12bf693d2d317c3313ee91058b2289d65a57f386
+ Author: Alan Modra <amodra@bigpond.net.au>
+ Date: Thu Jun 6 14:48:22 2013 +0930
+
+ libtool: fix refixed unmangled powerpc*le-linux support patch
+
+ * m4/libtool.m4: fix refixed badly unmangled hunks from earlier
+ powerpc*le changeset.
+ Reported by Peter Rosin.
+
+ Signed-off-by: Gary V. Vaughan <gary@gnu.org>
+
+ commit aa14ead14c5e375789f08026d9ece5963a9322c2
+ Author: Alan Modra <amodra@bigpond.net.au>
+ Date: Thu Jun 6 14:48:22 2013 +0930
+
+ libtool: refix unmangled powerpc*le-linux support patch
+
+ * m4/libtool.m4: refix badly unmangled hunks from earlier
+ powerpc*le changeset.
+ Reported by Peter Rosin.
+
+ Signed-off-by: Gary V. Vaughan <gary@gnu.org>
+
+ commit bb1c8bca8aee6e487aaf6b320b8f56f6ac0d21ac
+ Author: Gary V. Vaughan <gary@gnu.org>
+ Date: Thu Aug 22 15:38:00 2013 +0700
+
+ libtool: refactor powerpc*le-linux case branch expressions.
+
+ libtool (_LT_ENABLE_LOCK): make inner case branch expressions
+ consistent with outer case expression.
+ Reported by Peter Rosin.
+
+ Signed-off-by: Gary V. Vaughan <gary@gnu.org>
+
+ commit 03754a10041e86b2bd41b404a9ad824ef28bee7e
+ Author: Alan Modra <amodra@bigpond.net.au>
+ Date: Thu Jun 6 14:48:22 2013 +0930
+
+ libtool: fix mangled powerpc*le-linux support patch
+
+ * m4/libtool.m4: unmangled badly pasted hunks from previous
+ changeset.
+
+ commit f21c4d470423ab5b108918eaa5db295f644b12d1
+ Author: Alan Modra <amodra@bigpond.net.au>
+ Date: Thu Jun 6 14:48:22 2013 +0930
+
+ libtool: initial powerpc*le-linux support
+
+ * m4/libtool.m4 (ld -m flags): Remove non-canonical ppc host match.
+ Support little-endian powerpc linux host.
+
+==========================================================================
+---
+ libltdl/m4/libtool.m4 | 12 +++++++++---
+ 1 files changed, 9 insertions(+), 3 deletions(-)
+
+diff --git a/libltdl/m4/libtool.m4 b/libltdl/m4/libtool.m4
+index d812584..7aefebc 100644
+--- a/libltdl/m4/libtool.m4
++++ b/libltdl/m4/libtool.m4
+@@ -1268,7 +1268,7 @@ ia64-*-hpux*)
+ rm -rf conftest*
+ ;;
+
+-x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \
++x86_64-*kfreebsd*-gnu|x86_64-*linux*|powerpc*-*linux*| \
+ s390*-*linux*|s390*-*tpf*|sparc*-*linux*)
+ # Find out which ABI we are using.
+ echo 'int i;' > conftest.$ac_ext
+@@ -1282,7 +1282,10 @@ s390*-*linux*|s390*-*tpf*|sparc*-*linux*)
+ x86_64-*linux*)
+ LD="${LD-ld} -m elf_i386"
+ ;;
+- ppc64-*linux*|powerpc64-*linux*)
++ powerpc64le-*linux*)
++ LD="${LD-ld} -m elf32lppclinux"
++ ;;
++ powerpc64-*linux*)
+ LD="${LD-ld} -m elf32ppclinux"
+ ;;
+ s390x-*linux*)
+@@ -1301,7 +1304,10 @@ s390*-*linux*|s390*-*tpf*|sparc*-*linux*)
+ x86_64-*linux*)
+ LD="${LD-ld} -m elf_x86_64"
+ ;;
+- ppc*-*linux*|powerpc*-*linux*)
++ powerpcle-*linux*)
++ LD="${LD-ld} -m elf64lppc"
++ ;;
++ powerpc-*linux*)
+ LD="${LD-ld} -m elf64ppc"
+ ;;
+ s390*-*linux*|s390*-*tpf*)
+--
+1.7.1
+
diff --git a/maint/darwin-ifort.patch b/maint/darwin-ifort.patch
index 7ce8b39211..42c7816200 100644
--- a/maint/darwin-ifort.patch
+++ b/maint/darwin-ifort.patch
@@ -1,11 +1,11 @@
--- confdb/libtool.m4~ 2014-12-23 10:59:38.000000000 -0600
+++ confdb/libtool.m4 2014-12-23 11:05:54.000000000 -0600
-@@ -1088,7 +1088,10 @@ m4_defun([_LT_DARWIN_LINKER_FEATURES],
+@@ -1097,7 +1097,10 @@
_LT_TAGVAR(link_all_deplibs, $1)=yes
- _LT_TAGVAR(allow_undefined_flag, $1)=$_lt_dar_allow_undefined
+ _LT_TAGVAR(allow_undefined_flag, $1)="$_lt_dar_allow_undefined"
case $cc_basename in
-- ifort*|nagfor*) _lt_dar_can_shared=yes ;;
-+ ifort*|nagfor*)
+- ifort*) _lt_dar_can_shared=yes ;;
++ ifort*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _lt_dar_can_shared=yes
+ ;;
diff --git a/maint/libtool.m4.patch b/maint/libtool.m4.patch
new file mode 100644
index 0000000000..4ad76286cb
--- /dev/null
+++ b/maint/libtool.m4.patch
@@ -0,0 +1,11 @@
+--- confdb/libtool.m4 2013-03-29 16:26:23.162062517 -0500
++++ confdb/libtool.m4 2013-06-21 14:22:05.138914413 -0500
+@@ -4817,6 +4817,8 @@
+ lf95*) # Lahey Fortran 8.1
+ _LT_TAGVAR(whole_archive_flag_spec, $1)=
+ tmp_sharedflag='--shared' ;;
++ nagfor*) # NAGFOR 5.3
++ tmp_sharedflag='-Wl,-shared' ;;
+ xl[[cC]]* | bgxl[[cC]]* | mpixl[[cC]]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ tmp_sharedflag='-qmkshrobj'
+ tmp_addflag= ;;
--
2.7.4

13
SOURCES/0002-pm-gforker-include-MPL-when-linking.patch
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@ -0,0 +1,13 @@
diff --git mpich-3.2/src/pm/gforker/Makefile.mk~ mpich-3.2/src/pm/gforker/Makefile.mk
index 3a156057b9..afb7b41a01 100644
--- mpich-3.2/src/pm/gforker/Makefile.mk~
+++ mpich-3.2/src/pm/gforker/Makefile.mk
@@ -22,7 +22,7 @@ src_pm_gforker_mpiexec_CPPFLAGS = $(common_pm_includes) $(AM_CPPFLAGS)
else !PRIMARY_PM_GFORKER
bin_PROGRAMS += src/pm/gforker/mpiexec.gforker
src_pm_gforker_mpiexec_gforker_SOURCES = src/pm/gforker/mpiexec.c
-src_pm_gforker_mpiexec_gforker_LDADD = src/pm/util/libmpiexec.a
+src_pm_gforker_mpiexec_gforker_LDADD = src/pm/util/libmpiexec.a $(mpllib)
# we may not want to add AM_CPPFLAGS for this program
src_pm_gforker_mpiexec_gforker_CPPFLAGS = $(common_pm_includes) $(AM_CPPFLAGS)
endif !PRIMARY_PM_GFORKER

13
SOURCES/0003-soften-version-check.patch
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@ -0,0 +1,13 @@
diff --git mpich-3.2/./src/binding/cxx/mpicxx.h.in~ mpich-3.2/./src/binding/cxx/mpicxx.h.in
index 375c081e0e..24f1d6c2cc 100644
--- mpich-3.2/./src/binding/cxx/mpicxx.h.in~
+++ mpich-3.2/./src/binding/cxx/mpicxx.h.in
@@ -17,7 +17,7 @@
// between 3.2.3 and 3.4.3 (!!) Normally such changes
// should only occur at major releases (e.g., version 3 to 4)
#ifdef __GNUC__
-# if __GNUC__ >= @GNUCXX_VERSION@
+# if __GNUC__ >= @GNUCXX_VERSION@ && @GNUCXX_VERSION@ == 3
# if __GNUC_MINOR__ > 2 && @GNUCXX_MINORVERSION@ == 2
# error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
# endif

48
SOURCES/0003-unbundle-YAML-Tiny.patch
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@ -0,0 +1,48 @@
From e052dd9f07bdcf9c5ec738d64ee019b8a0b8b183 Mon Sep 17 00:00:00 2001
From: Michal Schmidt <mschmidt@redhat.com>
Date: Thu, 19 May 2016 18:16:05 +0200
Subject: [PATCH 3/4] unbundle YAML::Tiny

Newer YAML::Tiny is stricter, so fix YAML syntax error in bcast.c.
---
maint/Makefile.mk | 3 ---
src/mpi/coll/bcast.c | 2 +-
2 files changed, 1 insertion(+), 4 deletions(-)

diff --git a/maint/Makefile.mk b/maint/Makefile.mk
index 83a9572daf..751025969c 100644
--- a/maint/Makefile.mk
+++ b/maint/Makefile.mk
@@ -28,7 +28,6 @@ dist_noinst_SCRIPTS += \
maint/extractcvars \
maint/genstates.in \
maint/getcoverage.in \
- maint/local_perl/lib/YAML/Tiny.pm \
maint/parse.sub \
maint/parsetest \
maint/release.pl \
@@ -43,8 +42,6 @@ dist_noinst_DATA += \
maint/errmsgdirs \
maint/cvardirs \
maint/gccimpgen.cpp \
- maint/local_perl/README \
- maint/local_perl/YAML-Tiny-1.41.tar.gz \
maint/mpi1.lst \
maint/setup.jpg \
maint/structalign.c \
diff --git a/src/mpi/coll/bcast.c b/src/mpi/coll/bcast.c
index 64536a3494..8e55eb5268 100644
--- a/src/mpi/coll/bcast.c
+++ b/src/mpi/coll/bcast.c
@@ -79,7 +79,7 @@ cvars:
class : device
verbosity : MPI_T_VERBOSITY_USER_BASIC
scope : MPI_T_SCOPE_ALL_EQ
- description : Enable SMP aware broadcast (See also: MPIR_CVAR_MAX_SMP_BCAST_MSG_SIZE)
+ description : "Enable SMP aware broadcast (See also: MPIR_CVAR_MAX_SMP_BCAST_MSG_SIZE)"
- name : MPIR_CVAR_MAX_SMP_BCAST_MSG_SIZE
category : COLLECTIVE
--
2.7.4

119
SOURCES/0004-unbundle-hwloc-from-hydra.patch
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@ -0,0 +1,119 @@
From c832b1ca5566b79e73e07e794b9724b86ade8fb3 Mon Sep 17 00:00:00 2001
From: Michal Schmidt <mschmidt@redhat.com>
Date: Thu, 19 May 2016 18:16:05 +0200
Subject: [PATCH 4/4] unbundle hwloc from hydra

---
src/pm/hydra/autogen.sh | 3 --
src/pm/hydra/configure.ac | 49 ++++++++-----------------------
src/pm/hydra/tools/topo/hwloc/Makefile.mk | 11 -------
3 files changed, 13 insertions(+), 50 deletions(-)

diff --git a/src/pm/hydra/autogen.sh b/src/pm/hydra/autogen.sh
index e13fb9fb10..70429b1c3c 100755
--- a/src/pm/hydra/autogen.sh
+++ b/src/pm/hydra/autogen.sh
@@ -9,9 +9,6 @@ fi
echo "=== running autoreconf in 'mpl' ==="
(cd mpl && $autoreconf ${autoreconf_args:-"-vif"}) || exit 1
-echo "=== running autoreconf in 'tools/topo/hwloc/hwloc' ==="
-(cd tools/topo/hwloc/hwloc && ./autogen.sh) || exit 1
-
echo "=== running autoreconf in '.' ==="
$autoreconf ${autoreconf_args:-"-vif"} || exit 1
diff --git a/src/pm/hydra/configure.ac b/src/pm/hydra/configure.ac
index d994d4bd1a..f7ca3f1845 100644
--- a/src/pm/hydra/configure.ac
+++ b/src/pm/hydra/configure.ac
@@ -407,44 +407,23 @@ AC_MSG_RESULT([$hydra_topolib_list])
hydra_topolibs="`echo $hydra_topolib_list | sed -e 's/:/ /g' -e 's/,/ /g'`"
-# Unconditionally include the hwloc macros, even if we are using an
-# external hwloc (or hwloc is disabled). This is needed for the
-# AM_CONDITIONALS that we will set later.
-m4_include([tools/topo/hwloc/hwloc/config/hwloc.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_check_attributes.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_check_visibility.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_check_vendor.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_components.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_pkg.m4])
-
have_hwloc=no
for hydra_topolib in ${hydra_topolibs}; do
case "$hydra_topolib" in
hwloc)
- if test "$with_hwloc_prefix" = "embedded" ; then
- HWLOC_SETUP_CORE([tools/topo/hwloc/hwloc],[have_hwloc=yes],[have_hwloc=no],[1])
- # Only build hwloc in embedded mode
- if test "$have_hwloc" = "yes" ; then
- hydra_use_embedded_hwloc=yes
- CFLAGS="$HWLOC_EMBEDDED_CFLAGS $CFLAGS"
- CPPFLAGS="$HWLOC_EMBEDDED_CPPFLAGS $CPPFLAGS"
- LIBS="$HWLOC_EMBEDDED_LIBS $LIBS"
- fi
- else
- AC_CHECK_HEADERS([hwloc.h])
- # hwloc_topology_set_pid was added in hwloc-1.0.0, which is our minimum
- # required version
- AC_CHECK_LIB([hwloc],[hwloc_topology_set_pid])
- AC_MSG_CHECKING([if non-embedded hwloc works])
- if test "$ac_cv_header_hwloc_h" = "yes" -a "$ac_cv_lib_hwloc_hwloc_topology_set_pid" = "yes" ; then
- have_hwloc=yes
- fi
- AC_MSG_RESULT([$have_hwloc])
- fi
-
- # FIXME: Disable hwloc on Cygwin for now. The hwloc package, atleast as of 1.0.2,
- # does not install correctly on Cygwin
- AS_CASE([$host], [*-*-cygwin], [have_hwloc=no])
+ AC_CHECK_HEADERS([hwloc.h])
+ # hwloc_topology_set_pid was added in hwloc-1.0.0, which is our minimum
+ # required version
+ AC_CHECK_LIB([hwloc],[hwloc_topology_set_pid])
+ AC_MSG_CHECKING([if non-embedded hwloc works])
+ if test "$ac_cv_header_hwloc_h" = "yes" -a "$ac_cv_lib_hwloc_hwloc_topology_set_pid" = "yes" ; then
+ have_hwloc=yes
+ fi
+ AC_MSG_RESULT([$have_hwloc])
+
+ # FIXME: Disable hwloc on Cygwin for now. The hwloc package, atleast as of 1.0.2,
+ # does not install correctly on Cygwin
+ AS_CASE([$host], [*-*-cygwin], [have_hwloc=no])
if test "$have_hwloc" = "yes" ; then
AC_DEFINE(HAVE_HWLOC,1,[Define if hwloc is available])
@@ -476,9 +455,7 @@ else
AC_DEFINE(HYDRA_DEFAULT_TOPOLIB,NULL,[Default processor topology library])
fi
-HWLOC_DO_AM_CONDITIONALS
AM_CONDITIONAL([hydra_have_hwloc], [test "${have_hwloc}" = "yes"])
-AM_CONDITIONAL([hydra_use_embedded_hwloc], [test "${hydra_use_embedded_hwloc}" = "yes"])
AC_MSG_CHECKING([available processor topology libraries])
AC_MSG_RESULT([$available_topolibs])
diff --git a/src/pm/hydra/tools/topo/hwloc/Makefile.mk b/src/pm/hydra/tools/topo/hwloc/Makefile.mk
index 441ea1ad13..dc161daa5c 100644
--- a/src/pm/hydra/tools/topo/hwloc/Makefile.mk
+++ b/src/pm/hydra/tools/topo/hwloc/Makefile.mk
@@ -7,14 +7,3 @@
libhydra_la_SOURCES += tools/topo/hwloc/topo_hwloc.c
noinst_HEADERS += tools/topo/hwloc/topo_hwloc.h
-
-if hydra_use_embedded_hwloc
-AM_CPPFLAGS += -I$(top_srcdir)/tools/topo/hwloc/hwloc/include \
- -I$(top_builddir)/tools/topo/hwloc/hwloc/include
-
-# Append hwloc to the external subdirs, so it gets built first
-external_subdirs += tools/topo/hwloc/hwloc
-external_dist_subdirs += tools/topo/hwloc/hwloc
-external_ldflags += -L$(top_builddir)/tools/topo/hwloc/hwloc/src
-external_libs += -lhwloc_embedded
-endif
--
2.7.4

116
SOURCES/mpich-3.0.4-rh.patch
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@ -0,0 +1,116 @@
diff -upr mpich-3.0.4/src/pm/hydra/configure.ac mpich-3.0.4.new/src/pm/hydra/configure.ac
--- mpich-3.0.4/src/pm/hydra/configure.ac 2013-04-24 10:05:00.000000000 -0400
+++ mpich-3.0.4.new/src/pm/hydra/configure.ac 2013-09-05 11:49:01.000000000 -0400
@@ -10,28 +10,6 @@ AC_INIT([Hydra], MPICH_VERSION_m4)
AC_CONFIG_AUX_DIR(confdb)
AC_CONFIG_MACRO_DIR(confdb)
-# needed by hwloc in embedded mode. Must come very early to avoid
-# bizarre expansion ordering warnings
-AC_CANONICAL_TARGET
-AC_ARG_PROGRAM
-
-dnl must come before LT_INIT, which AC_REQUIREs AC_PROG_CC
-dnl must also come before AC_USE_SYSTEM_EXTENSIONS
-PAC_PROG_CC
-
-# also needed by hwloc in embedded mode, must also come early for expansion
-# ordering reasons
-AC_USE_SYSTEM_EXTENSIONS
-
-# Define -D_DARWIN_C_SOURCE on OS/X to ensure that hwloc will build even if we
-# are building under MPICH with --enable-strict that defined _POSIX_C_SOURCE.
-# Some standard Darwin headers don't build correctly under a strict posix
-# environment.
-AS_CASE([$host],
- [*-*-darwin*], [PAC_APPEND_FLAG([-D_DARWIN_C_SOURCE],[CPPFLAGS])]
-)
-
-
AM_INIT_AUTOMAKE([-Wall -Werror foreign 1.12.3])
AM_PROG_AR
@@ -353,54 +331,16 @@ AC_MSG_RESULT([$hydra_topolib_list])
hydra_topolibs="`echo $hydra_topolib_list | sed -e 's/:/ /g' -e 's/,/ /g'`"
-# Unconditionally include the hwloc macros, even if we are using an
-# external hwloc (or hwloc is disabled). This is needed for the
-# AM_CONDITIONALS that we will set later.
-m4_include([tools/topo/hwloc/hwloc/config/hwloc.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_check_attributes.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_check_visibility.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_check_vendor.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_components.m4])
-m4_include([tools/topo/hwloc/hwloc/config/hwloc_pkg.m4])
-
have_hwloc=no
-for hydra_topolib in ${hydra_topolibs}; do
- case "$hydra_topolib" in
- hwloc)
- if test "$with_hwloc_prefix" = "embedded" ; then
- HWLOC_SETUP_CORE([tools/topo/hwloc/hwloc],[have_hwloc=yes],[have_hwloc=no],[1])
- # Only build hwloc in embedded mode
- if test "$have_hwloc" = "yes" ; then
- hydra_use_embedded_hwloc=yes
- CFLAGS="$HWLOC_EMBEDDED_CFLAGS $CFLAGS"
- CPPFLAGS="$HWLOC_EMBEDDED_CPPFLAGS $CPPFLAGS"
- LIBS="$HWLOC_EMBEDDED_LIBS $LIBS"
- fi
- else
- AC_CHECK_HEADERS([hwloc.h])
- # hwloc_topology_set_pid was added in hwloc-1.0.0, which is our minimum
- # required version
- AC_CHECK_LIB([hwloc],[hwloc_topology_set_pid])
- AC_MSG_CHECKING([if non-embedded hwloc works])
- if test "$ac_cv_header_hwloc_h" = "yes" -a "$ac_cv_lib_hwloc_hwloc_topology_set_pid" = "yes" ; then
- have_hwloc=yes
- fi
- AC_MSG_RESULT([$have_hwloc])
- fi
-
- # FIXME: Disable hwloc on Cygwin for now. The hwloc package, atleast as of 1.0.2,
- # does not install correctly on Cygwin
- AS_CASE([$host], [*-*-cygwin], [have_hwloc=no])
-
- if test "$have_hwloc" = "yes" ; then
- AC_DEFINE(HAVE_HWLOC,1,[Define if hwloc is available])
- available_topolibs="$available_topolibs hwloc"
- fi
- ;;
- *)
- ;;
- esac
-done
+AC_CHECK_HEADERS([hwloc.h])
+# hwloc_topology_set_pid was added in hwloc-1.0.0, which is our minimum
+# required version
+AC_CHECK_LIB([hwloc],[hwloc_topology_set_pid])
+AC_MSG_CHECKING([if non-embedded hwloc works])
+if test "$ac_cv_header_hwloc_h" = "yes" -a "$ac_cv_lib_hwloc_hwloc_topology_set_pid" = "yes" ; then
+ have_hwloc=yes
+fi
+AC_MSG_RESULT([$have_hwloc])
tmp_list=
for hydra_topolib in ${available_topolibs}; do
@@ -424,7 +364,6 @@ fi
HWLOC_DO_AM_CONDITIONALS
AM_CONDITIONAL([hydra_have_hwloc], [test "${have_hwloc}" = "yes"])
-AM_CONDITIONAL([hydra_use_embedded_hwloc], [test "${hydra_use_embedded_hwloc}" = "yes"])
AC_MSG_CHECKING([available processor topology libraries])
AC_MSG_RESULT([$available_topolibs])
diff -upr mpich-3.0.4/src/pm/hydra/autogen.sh mpich-3.0.4.new/src/pm/hydra/autogen.sh
--- mpich-3.0.4/src/pm/hydra/autogen.sh 2013-04-24 10:05:00.000000000 -0400
+++ mpich-3.0.4.new/src/pm/hydra/autogen.sh 2013-09-05 11:50:18.000000000 -0400
@@ -8,8 +8,6 @@ fi
echo "=== running autoreconf in 'mpl' ==="
(cd mpl && $autoreconf ${autoreconf_args:-"-vif"})
-echo "=== running autoreconf in 'tools/topo/hwloc/hwloc' ==="
-(cd tools/topo/hwloc/hwloc && $autoreconf ${autoreconf_args:-"-vif"})
$autoreconf ${autoreconf_args:-"-vif"}
# Remove the autom4te.cache folders for a release-like structure.

7
SOURCES/mpich.macros.in
Unescape View File

@ -0,0 +1,7 @@
%_@MACRONAME@_load \
. /etc/profile.d/modules.sh; \
module load mpi/@MODULENAME@; \
export CFLAGS="$CFLAGS %{optflags}";
%_@MACRONAME@_unload \
. /etc/profile.d/modules.sh; \
module unload mpi/@MODULENAME@;

20
SOURCES/mpich.module.in
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@ -0,0 +1,20 @@
#%Module 1.0
#
# MPICH module for use with 'environment-modules' package:
#
conflict mpi
prepend-path PATH @LIBDIR@/bin
prepend-path LD_LIBRARY_PATH @LIBDIR@/lib
prepend-path PYTHONPATH @PYSITEARCH@
prepend-path MANPATH @MANDIR@
prepend-path PKG_CONFIG_PATH @LIBDIR@/lib/pkgconfig
setenv MPI_BIN @LIBDIR@/bin
setenv MPI_SYSCONFIG @ETCDIR@
setenv MPI_FORTRAN_MOD_DIR @FMODDIR@
setenv MPI_INCLUDE @INCDIR@
setenv MPI_LIB @LIBDIR@/lib
setenv MPI_MAN @MANDIR@
setenv MPI_PYTHON_SITEARCH @PYSITEARCH@
setenv MPI_COMPILER @COMPILER@
setenv MPI_SUFFIX @SUFFIX@
setenv MPI_HOME @LIBDIR@

540
SPECS/mpich.spec
Unescape View File

@ -0,0 +1,540 @@
%{!?python_sitearch: %global python_sitearch %(%{__python} -c "from distutils.sysconfig import get_python_lib; print get_python_lib(1)")}

Summary: A high-performance implementation of MPI
Name: mpich
Version: 3.2
Release: 2%{?dist}
License: MIT
Group: Development/Libraries
URL: http://www.mpich.org

Source0: http://www.mpich.org/static/downloads/%{version}/%{name}-%{version}.tar.gz
Source1: mpich.macros.in
Source2: mpich.module.in
Patch1: https://trac.mpich.org/projects/mpich/raw-attachment/ticket/2299/0001-pm-remshell-include-MPL-when-linking.patch
Patch2: 0002-pm-gforker-include-MPL-when-linking.patch
Patch3: 0003-soften-version-check.patch
Patch4: 0001-hydra-improve-localhost-detection.patch
Patch5: 0001-Revert-require-automake-1.15.patch
Patch6: 0002-Revert-require-libtool-2.4.3.patch
Patch7: 0003-unbundle-YAML-Tiny.patch
Patch8: 0004-unbundle-hwloc-from-hydra.patch

# Source100 derived from
# Source100: http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz
# by
# rm -r src/mpid/pamid
# vi src/mpid/Makefile*
# and remove references to pamid
# rm -r src/mpid/ch3/channels/nemesis/netmod/scif
# vi src/src/mpid/ch3/channels/nemesis/netmod/Makefile*
# and remove references to scif
# rm -r src/pm/hydra/tools/topo/hwloc/hwloc
# vi src/pm/hydra/tools/topo/hwloc/Makefile.mk
# and remove references to hwloc
# rm `find * -name 'Makefile.in' -print | grep -v doc/ | grep -v src/mpi/romio/mpi2-other/`
# rm -r contrib www
# rm src/mpi/romio/test/external32.c
# rm `find * -name ar-lib -o -name compile -o -name config.guess -o -name config.sub -o -name depcomp -o -name missing -o -name configure -o -name .state-cache -o -name aclocal.mp -o -name libtool.m4`
# rm README.envvar maint/createcoverage maint/getcoverage src/include/mpichconf.h.in src/include/mpich_param_vals.h src/pm/hydra/include/hydra_config.h.in src/util/logging/common/state_names.h src/util/param/param_vals.c subsys_include.m4
# more extensive changes need to actually build are included in the mpich-3.0.4-rh.patch file
Source100: mpich-3.0.4-rh.tar.gz
Patch100: mpich-3.0.4-rh.patch

BuildRequires: libXt-devel, bison, flex, libuuid-devel
BuildRequires: gcc-c++ gcc-gfortran
BuildRequires: hwloc-devel >= 1.5
BuildRequires: perl, python, perl-Digest-MD5, perl-YAML-Tiny
BuildRequires: automake autoconf libtool gettext
%ifnarch s390
BuildRequires: valgrind-devel
%endif

%global common_desc MPICH is a high-performance and widely portable implementation of the Message\
Passing Interface (MPI) standard (MPI-1, MPI-2 and MPI-3). The goals of MPICH\
are: (1) to provide an MPI implementation that efficiently supports different\
computation and communication platforms including commodity clusters (desktop\
systems, shared-memory systems, multicore architectures), high-speed networks\
(10 Gigabit Ethernet, InfiniBand, Myrinet, Quadrics) and proprietary high-end\
computing systems (Blue Gene, Cray) and (2) to enable cutting-edge research in\
MPI through an easy-to-extend modular framework for other derived\
implementations.\
\
The mpich binaries in this RPM packages were configured to use the default\
process manager (Hydra) using the default device (ch3). The ch3 device\
was configured with support for the nemesis channel that allows for\
shared-memory and TCP/IP sockets based communication.

%description
%{common_desc}

%package 3.2
Summary: A high-performance implementation of MPI
Group: Development/Libraries
Obsoletes: mpich2 < 1.5-4
Obsoletes: mpich-libs < 1.1.1
Obsoletes: mpich-mpd < 1.4.1
Obsoletes: mpich < 3.0.4-9
Provides: mpi
Requires: environment-modules

%description 3.2
%{common_desc}

%package 3.2-autoload
Summary: Load mpich 3.2 automatically into profile
Group: System Environment/Base
Requires: mpich-3.2 = %{version}-%{release}

%description 3.2-autoload
This package contains profile files that make mpich 3.2 automatically loaded.

%package 3.2-devel
Summary: Development files for mpich-3.2
Group: Development/Libraries
Provides: mpi-devel
Obsoletes: mpich-devel < 3.0.4-9
Requires: mpich-3.2 = %{version}-%{release}
Requires: pkgconfig
Requires: gcc-gfortran

%description 3.2-devel
Contains development headers and libraries for mpich 3.2.

%package 3.2-doc
Summary: Documentations and examples for mpich 3.2
Group: Documentation
BuildArch: noarch
Obsoletes: mpich-doc < 3.0.4-9
Requires: mpich-3.2-devel = %{version}-%{release}

%description 3.2-doc
Contains documentations, examples and manpages for mpich 3.2.

%package 3.0
Summary: MPICH 3.0.x implementation of MPI
Group: Development/Libraries
Version: 3.0.4
Release: 10%{?dist}
Obsoletes: mpich2 < 1.5-4
Obsoletes: mpich-libs < 1.1.1
Obsoletes: mpich-mpd < 1.4.1
Obsoletes: mpich < 3.0.4-9
Provides: mpi
Provides: mpich = %{version}-%{release}
Provides: mpich%{?_isa} = %{version}-%{release}
Requires: environment-modules

%description 3.0
%{common_desc}

This package provides compatibility for applications compiled with MPICH 3.0.4.

%package 3.0-autoload
Summary: Load mpich 3.0 automatically into profile
Group: System Environment/Base
Version: %{version}
Release: %{release}
Obsoletes: mpich-autoload < 3.0.4-9
Provides: mpich-autoload = %{version}-%{release}
Requires: mpich-3.0 = %{version}-%{release}

%description 3.0-autoload
This package contains profile files that make mpich 3.0 automatically loaded.

%package 3.0-devel
Summary: Development files for mpich-3.0
Group: Development/Libraries
Version: %{version}
Release: %{release}
Provides: mpi-devel
Obsoletes: mpich-devel < 3.0.4-9
Provides: mpich-devel = %{version}-%{release}
Requires: mpich-3.0 = %{version}-%{release}
Requires: pkgconfig
Requires: gcc-gfortran

%description 3.0-devel
Contains development headers and libraries for mpich 3.0.

%package 3.0-doc
Summary: Documentations and examples for mpich 3.0
Group: Documentation
Version: %{version}
Release: %{release}
BuildArch: noarch
Obsoletes: mpich-doc < 3.0.4-9
Provides: mpich-doc = %{version}-%{release}
Requires: mpich-3.0-devel = %{version}-%{release}

%description 3.0-doc
Contains documentations, examples and manpages for mpich 3.0.

# We only compile with gcc, but other people may want other compilers.
# Set the compiler here.
%{!?opt_cc: %global opt_cc gcc}
%{!?opt_fc: %global opt_fc gfortran}
%{!?opt_f77: %global opt_f77 gfortran}
# Optional CFLAGS to use with the specific compiler...gcc doesn't need any,
# so uncomment and undefine to NOT use
%{!?opt_cc_cflags: %global opt_cc_cflags %{optflags}}
%{!?opt_fc_fflags: %global opt_fc_fflags %{optflags}}
#%{!?opt_fc_fflags: %global opt_fc_fflags %{optflags} -I%{_fmoddir}}
%{!?opt_f77_fflags: %global opt_f77_fflags %{optflags}}

%prep
%setup -q -b 100
%patch1 -p1
%patch2 -p1
%patch3 -p1
%patch4 -p1
%patch5 -p1
%patch6 -p1
%patch7 -p1
%patch8 -p1

# bundled knem module
rm -r contrib/
# bundled YAML::Tiny
rm -r maint/local_perl/
# bundled hwloc
rm -r src/pm/hydra/tools/topo/hwloc/hwloc/
# HTML manpages
rm -r www/

./autogen.sh
cd ..

cd mpich-3.0.4
%patch100 -p1 -b .rh

./autogen.sh
cd src/pm/hydra && ./autogen.sh && cd ../../..
cd ..

%build
cd ..

%ifarch s390
%global m_option -m31
%else
%global m_option -m%{__isa_bits}
%endif

%ifarch %{arm} aarch64
%global m_option ""
%endif

%global selected_channels ch3:nemesis

%ifarch %{ix86} x86_64 s390 %{arm} aarch64
%global XFLAGS -fPIC
%endif

%global variant mpich-3.2
%global libname %{variant}
%global namearch %{variant}-%{_arch}

cd mpich-3.2
%configure \
--enable-sharedlibs=gcc \
--enable-shared \
--enable-static=no \
--enable-lib-depend \
--disable-rpath \
--disable-silent-rules \
--enable-fc \
--with-device=%{selected_channels} \
--with-pm=hydra:gforker \
--sysconfdir=%{_sysconfdir}/%{namearch} \
--includedir=%{_includedir}/%{namearch} \
--bindir=%{_libdir}/%{libname}/bin \
--libdir=%{_libdir}/%{libname}/lib \
--datadir=%{_datadir}/%{libname} \
--mandir=%{_mandir}/%{libname} \
--docdir=%{_docdir}/%{libname} \
--with-hwloc-prefix=system \
FC=%{opt_fc} \
F77=%{opt_f77} \
CFLAGS="%{m_option} %{optflags} %{?XFLAGS}" \
CXXFLAGS="%{m_option} %{optflags} %{?XFLAGS}" \
FCFLAGS="%{m_option} %{optflags} %{?XFLAGS}" \
FFLAGS="%{m_option} %{optflags} %{?XFLAGS}" \
LDFLAGS='-Wl,-z,noexecstack' \
MPICH2LIB_CFLAGS="%{?opt_cc_cflags}" \
MPICH2LIB_CXXFLAGS="%{optflags}" \
MPICH2LIB_FCFLAGS="%{?opt_fc_fflags}" \
MPICH2LIB_FFLAGS="%{?opt_f77_fflags}"
# MPICH2LIB_LDFLAGS='-Wl,-z,noexecstack' \
# MPICH2_MPICC_FLAGS="%{m_option} -O2 %{?XFLAGS}" \
# MPICH2_MPICXX_FLAGS="%{m_option} -O2 %{?XFLAGS}" \
# MPICH2_MPIFC_FLAGS="%{m_option} -O2 %{?XFLAGS}" \
# MPICH2_MPIF77_FLAGS="%{m_option} -O2 %{?XFLAGS}"
# --with-openpa-prefix=embedded \

# FCFLAGS="%{?opt_fc_fflags} -I%{_fmoddir}/%{name} %{?XFLAGS}" \

# Remove rpath
sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool

make %{?_smp_mflags} V=1
cd ..


%ifarch s390
%global m_option -m31
%else
%global m_option -m%{__isa_bits}
%endif

%ifarch %{arm} aarch64
%global m_option ""
%endif

%ifarch %{ix86} x86_64
%global selected_channels ch3:nemesis
%else
%global selected_channels ch3:sock
%endif

%ifarch %{ix86} x86_64 s390 %{arm}
%global XFLAGS -fPIC
%endif

%global variant mpich
%global libname %{variant}
%global namearch %{variant}-%{_arch}

cd mpich-3.0.4
%configure \
--enable-sharedlibs=gcc \
--enable-shared \
--enable-lib-depend \
--disable-rpath \
--enable-fc \
--with-device=%{selected_channels} \
--with-pm=hydra:gforker \
--sysconfdir=%{_sysconfdir}/%{namearch} \
--includedir=%{_includedir}/%{namearch} \
--bindir=%{_libdir}/%{libname}/bin \
--libdir=%{_libdir}/%{libname}/lib \
--datadir=%{_datadir}/%{libname} \
--mandir=%{_mandir}/%{libname} \
--docdir=%{_docdir}/%{libname} \
--with-hwloc-prefix=system \
FC=%{opt_fc} \
F77=%{opt_f77} \
CFLAGS="%{m_option} %{optflags} %{?XFLAGS}" \
CXXFLAGS="%{m_option} %{optflags} %{?XFLAGS}" \
FCFLAGS="%{m_option} %{optflags} %{?XFLAGS}" \
FFLAGS="%{m_option} %{optflags} %{?XFLAGS}" \
LDFLAGS='-Wl,-z,noexecstack' \
MPICH2LIB_CFLAGS="%{?opt_cc_cflags}" \
MPICH2LIB_CXXFLAGS="%{optflags}" \
MPICH2LIB_FCFLAGS="%{?opt_fc_fflags}" \
MPICH2LIB_FFLAGS="%{?opt_f77_fflags}"
# MPICH2LIB_LDFLAGS='-Wl,-z,noexecstack' \
# MPICH2_MPICC_FLAGS="%{m_option} -O2 %{?XFLAGS}" \
# MPICH2_MPICXX_FLAGS="%{m_option} -O2 %{?XFLAGS}" \
# MPICH2_MPIFC_FLAGS="%{m_option} -O2 %{?XFLAGS}" \
# MPICH2_MPIF77_FLAGS="%{m_option} -O2 %{?XFLAGS}"
# --with-openpa-prefix=embedded \

# FCFLAGS="%{?opt_fc_fflags} -I%{_fmoddir}/%{name} %{?XFLAGS}" \
#make %{?_smp_mflags} doesn't work
make V=1
cd ..

%install
cd ..

finish_install() {
local VARIANT="$1"
local LIBNAME="$VARIANT"
local NAMEARCH="$VARIANT-%{_arch}"

find %{buildroot}%{_libdir}/$LIBNAME/lib -name \*.la -delete
mkdir -p %{buildroot}/%{_fmoddir}/$NAMEARCH
mkdir -p %{buildroot}%{python_sitearch}/$LIBNAME

# Make the environment-modules file
mkdir -p %{buildroot}%{_sysconfdir}/modulefiles/mpi
sed "s#@LIBDIR@#%{_libdir}/$LIBNAME#g;
s#@ETCDIR@#%{_sysconfdir}/$NAMEARCH#g;
s#@FMODDIR@#%{_fmoddir}/$NAMEARCH#g;
s#@INCDIR@#%{_includedir}/$NAMEARCH#g;
s#@MANDIR@#%{_mandir}/$LIBNAME#g;
s#@PYSITEARCH@#%{python_sitearch}/$LIBNAME#g;
s#@COMPILER@#$NAMEARCH#g;
s#@SUFFIX@#_$LIBNAME#g" \
< %SOURCE2 \
> %{buildroot}%{_sysconfdir}/modulefiles/mpi/$NAMEARCH

# Make the profile script for autoload
mkdir -p %{buildroot}%{_sysconfdir}/profile.d
cat << EOF > %{buildroot}%{_sysconfdir}/profile.d/$NAMEARCH.sh
# Load mpich environment module
module load mpi/$NAMEARCH
EOF
cp -p %{buildroot}%{_sysconfdir}/profile.d/$NAMEARCH.{sh,csh}

# Make the rpm macro file
mkdir -p %{buildroot}/%{_sysconfdir}/rpm
# do not expand _arch
sed "s#@MACRONAME@#${LIBNAME//[-.]/_}#g;
s#@MODULENAME@#$VARIANT-%%{_arch}#" \
< %SOURCE1 \
> %{buildroot}/%{_sysconfdir}/rpm/macros.$LIBNAME
}

cd mpich-3.2
%make_install
cd ..
finish_install mpich-3.2

cd mpich-3.0.4
%make_install
cd ..
finish_install mpich
rm -f %{buildroot}%{_libdir}/mpich/lib/lib{*mpich*,opa,mpl}.a
ln -s mpich-%{_arch} %{buildroot}%{_sysconfdir}/modulefiles/mpi/mpich-3.0-%{_arch}
ln -s mpich-%{_arch} %{buildroot}%{_sysconfdir}/mpich-3.0-%{_arch}
# Silence rpmlint
sed -i '/^#! \//,1 d' %{buildroot}%{_sysconfdir}/mpich-%{_arch}/mpi*.conf

%global variant mpich-3.2
%global libname %{variant}
%global namearch %{variant}-%{_arch}

%files 3.2
%defattr(-,root,root,-)
%doc CHANGES COPYRIGHT README RELEASE_NOTES
%dir %{_libdir}/%{libname}
%dir %{_libdir}/%{libname}/lib
%dir %{_libdir}/%{libname}/bin
%{_libdir}/%{libname}/lib/*.so.*
%{_libdir}/%{libname}/bin/hydra*
%{_libdir}/%{libname}/bin/mpichversion
%{_libdir}/%{libname}/bin/mpiexec*
%{_libdir}/%{libname}/bin/mpirun
%{_libdir}/%{libname}/bin/mpivars
%dir %{python_sitearch}/%{libname}
%dir %{_fmoddir}/%{namearch}
%{_libdir}/%{libname}/bin/parkill
%dir %{_mandir}/%{libname}
%dir %{_mandir}/%{libname}/man1
%{_mandir}/%{libname}/man1/mpiexec*
%{_mandir}/%{libname}/man1/hydra*
%dir %{_sysconfdir}/modulefiles/mpi
%{_sysconfdir}/modulefiles/mpi/%{namearch}

%files 3.2-autoload
%defattr(-,root,root,-)
%{_sysconfdir}/profile.d/%{namearch}.*

%files 3.2-devel
%defattr(-,root,root,-)
%{_libdir}/%{libname}/bin/mpicc
%{_libdir}/%{libname}/bin/mpicxx
%{_libdir}/%{libname}/bin/mpic++
%{_libdir}/%{libname}/bin/mpif*
%{_mandir}/%{libname}/man1/mpic*
%{_mandir}/%{libname}/man1/mpif*
%{_includedir}/%{namearch}/
%{_libdir}/%{libname}/lib/*.so
%{_libdir}/%{libname}/lib/pkgconfig/
%config %{_sysconfdir}/rpm/macros.%{libname}

%files 3.2-doc
%defattr(-,root,root,-)
%{_docdir}/%{libname}
%{_mandir}/%{libname}/man3/

%global variant mpich
%global libname %{variant}
%global namearch %{variant}-%{_arch}

%files 3.0
%defattr(-,root,root,-)
%doc COPYRIGHT
%dir %{_libdir}/%{libname}
%dir %{_libdir}/%{libname}/lib
%dir %{_libdir}/%{libname}/bin
%{_libdir}/%{libname}/lib/*.so.*
%{_libdir}/%{libname}/bin/hydra*
%{_libdir}/%{libname}/bin/mpichversion
%{_libdir}/%{libname}/bin/mpiexec*
%{_libdir}/%{libname}/bin/mpirun
%dir %{python_sitearch}/%{libname}
%dir %{_fmoddir}/%{namearch}
%{_libdir}/%{libname}/bin/parkill
%dir %{_mandir}/%{libname}
%dir %{_mandir}/%{libname}/man1
%{_mandir}/%{libname}/man1/mpiexec*
%dir %{_sysconfdir}/modulefiles/mpi
%{_sysconfdir}/modulefiles/mpi/%{namearch}
%{_sysconfdir}/modulefiles/mpi/mpich-3.0-%{_arch}

%files 3.0-autoload
%defattr(-,root,root,-)
%{_sysconfdir}/profile.d/%{namearch}.*

%files 3.0-devel
%defattr(-,root,root,-)
%{_libdir}/%{libname}/bin/mpicc
%{_libdir}/%{libname}/bin/mpicxx
%{_libdir}/%{libname}/bin/mpic++
%{_libdir}/%{libname}/bin/mpif*
%{_mandir}/%{libname}/man1/mpic*
%{_mandir}/%{libname}/man1/mpif*
%config %{_sysconfdir}/%{namearch}/
%{_sysconfdir}/mpich-3.0-%{_arch}
%{_includedir}/%{namearch}/
%{_libdir}/%{libname}/lib/*.so
%{_libdir}/%{libname}/lib/pkgconfig/
%config %{_sysconfdir}/rpm/macros.%{libname}

%files 3.0-doc
%defattr(-,root,root,-)
%{_docdir}/%{libname}
%{_mandir}/%{libname}/man3/

%changelog
* Fri Jul 29 2016 Michal Schmidt <mschmidt@redhat.com> - 3.2-2
- Remove bad rpath in two binaries in mpich-3.2.
- Restore trimming of shebang lines in config files in mpich-3.0-devel.
- Related: rhbz1091532

* Wed Jun 22 2016 Michal Schmidt <mschmidt@redhat.com> - 3.2-1
- Update to upstream version mpich-3.2 with patches from Fedora.
- Keep 3.0.4 as 'mpich-3.0' for backwards compatibility.
- Resolves: rhbz1091532
- Resolves: rhbz1142117
- Resolves: rhbz1148992

* Wed Sep 10 2014 Yaakov Selkowitz <yselkowi@redhat.com> - 3.0.4-8
- Do not use -m64 on AArch64
Resolves: rhbz1077315

* Mon Mar 3 2014 Jay Fenlason <fenlason@redhat.com> - 3.0.4-7
- Update build flags to fix
Resolves: rhbz1070778

* Fri Jan 24 2014 Daniel Mach <dmach@redhat.com> - 3.0.4-6
- Mass rebuild 2014-01-24

* Fri Dec 27 2013 Daniel Mach <dmach@redhat.com> - 3.0.4-5
- Mass rebuild 2013-12-27

* Fri Oct 4 2013 Jay Fenlason <fenlason@redhat.com> 3.0.4-4.el7
- Fix the module file to contain all the definitions we expect.
Resolves: rhbz1001469

* Wed Oct 2 2013 Jay Fenlason <fenlason@redhat.com> 3.0.4-3.el7
- Fix macros.mpich
Resolves: rhbz1001469

* Fri Sep 6 2013 Jay Fenlason <fenlason@redhat.com> 3.0.4-1.el7
- Initial import for RHEL, using sanitized source tarball.

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