diff --git a/refs.c b/refs.c
index 0d5fe7442a..83f0e68785 100644
--- a/refs.c
+++ b/refs.c
@@ -939,6 +939,8 @@ int ref_transaction_update(struct ref_transaction *transaction,
 		return -1;
 	}
 
+	flags &= REF_TRANSACTION_UPDATE_ALLOWED_FLAGS;
+
 	flags |= (new_sha1 ? REF_HAVE_NEW : 0) | (old_sha1 ? REF_HAVE_OLD : 0);
 
 	ref_transaction_add_update(transaction, refname, flags,
diff --git a/refs.h b/refs.h
index 78a26400b6..ae33a5f74d 100644
--- a/refs.h
+++ b/refs.h
@@ -344,6 +344,14 @@ int refs_pack_refs(struct ref_store *refs, unsigned int flags);
 #define REF_NODEREF	0x01
 #define REF_FORCE_CREATE_REFLOG 0x40
 
+/*
+ * Flags that can be passed in to ref_transaction_update
+ */
+#define REF_TRANSACTION_UPDATE_ALLOWED_FLAGS \
+	REF_ISPRUNING |                      \
+	REF_FORCE_CREATE_REFLOG |            \
+	REF_NODEREF
+
 /*
  * Setup reflog before using. Fill in err and return -1 on failure.
  */