Merge branch 'jk/warn-add-gitlink'

Using "git add d/i/r" when d/i/r is the top of the working tree of
a separate repository would create a gitlink in the index, which
would appear as a not-quite-initialized submodule to others.  We
learned to give warnings when this happens.

* jk/warn-add-gitlink:
  t: move "git add submodule" into test blocks
  add: warn when adding an embedded repository

Documentation/config.txt

@@ -348,6 +348,9 @@ advice.*::
 	rmHints::
 		In case of failure in the output of linkgit:git-rm[1],
 		show directions on how to proceed from the current state.
+	addEmbeddedRepo::
+		Advice on what to do when you've accidentally added one
+		git repo inside of another.
 --
 
 core.fileMode::

Documentation/git-add.txt

@@ -165,6 +165,13 @@ for "git add --no-all <pathspec>...", i.e. ignored removed files.
 	be ignored, no matter if they are already present in the work
 	tree or not.
 
+--no-warn-embedded-repo::
+	By default, `git add` will warn when adding an embedded
+	repository to the index without using `git submodule add` to
+	create an entry in `.gitmodules`. This option will suppress the
+	warning (e.g., if you are manually performing operations on
+	submodules).
+
 --chmod=(+|-)x::
 	Override the executable bit of the added files.  The executable
 	bit is only changed in the index, the files on disk are left

advice.c

@@ -16,6 +16,7 @@ int advice_detached_head = 1;
 int advice_set_upstream_failure = 1;
 int advice_object_name_warning = 1;
 int advice_rm_hints = 1;
+int advice_add_embedded_repo = 1;
 
 static struct {
 	const char *name;
@@ -36,6 +37,7 @@ static struct {
 	{ "setupstreamfailure", &advice_set_upstream_failure },
 	{ "objectnamewarning", &advice_object_name_warning },
 	{ "rmhints", &advice_rm_hints },
+	{ "addembeddedrepo", &advice_add_embedded_repo },
 
 	/* make this an alias for backward compatibility */
 	{ "pushnonfastforward", &advice_push_update_rejected }

advice.h

@@ -18,6 +18,7 @@ extern int advice_detached_head;
 extern int advice_set_upstream_failure;
 extern int advice_object_name_warning;
 extern int advice_rm_hints;
+extern int advice_add_embedded_repo;
 
 int git_default_advice_config(const char *var, const char *value);
 __attribute__((format (printf, 1, 2)))

builtin/add.c

@@ -250,6 +250,7 @@ N_("The following paths are ignored by one of your .gitignore files:\n");
 
 static int verbose, show_only, ignored_too, refresh_only;
 static int ignore_add_errors, intent_to_add, ignore_missing;
+static int warn_on_embedded_repo = 1;
 
 #define ADDREMOVE_DEFAULT 1
 static int addremove = ADDREMOVE_DEFAULT;
@@ -283,6 +284,8 @@ static struct option builtin_add_options[] = {
 	OPT_BOOL( 0 , "ignore-errors", &ignore_add_errors, N_("just skip files which cannot be added because of errors")),
 	OPT_BOOL( 0 , "ignore-missing", &ignore_missing, N_("check if - even missing - files are ignored in dry run")),
 	OPT_STRING( 0 , "chmod", &chmod_arg, N_("(+/-)x"), N_("override the executable bit of the listed files")),
+	OPT_HIDDEN_BOOL(0, "warn-embedded-repo", &warn_on_embedded_repo,
+			N_("warn when adding an embedded repository")),
 	OPT_END(),
 };
 
@@ -296,6 +299,45 @@ static int add_config(const char *var, const char *value, void *cb)
 	return git_default_config(var, value, cb);
 }
 
+static const char embedded_advice[] = N_(
+"You've added another git repository inside your current repository.\n"
+"Clones of the outer repository will not contain the contents of\n"
+"the embedded repository and will not know how to obtain it.\n"
+"If you meant to add a submodule, use:\n"
+"\n"
+"	git submodule add <url> %s\n"
+"\n"
+"If you added this path by mistake, you can remove it from the\n"
+"index with:\n"
+"\n"
+"	git rm --cached %s\n"
+"\n"
+"See \"git help submodule\" for more information."
+);
+
+static void check_embedded_repo(const char *path)
+{
+	struct strbuf name = STRBUF_INIT;
+
+	if (!warn_on_embedded_repo)
+		return;
+	if (!ends_with(path, "/"))
+		return;
+
+	/* Drop trailing slash for aesthetics */
+	strbuf_addstr(&name, path);
+	strbuf_strip_suffix(&name, "/");
+
+	warning(_("adding embedded git repository: %s"), name.buf);
+	if (advice_add_embedded_repo) {
+		advise(embedded_advice, name.buf, name.buf);
+		/* there may be multiple entries; advise only once */
+		advice_add_embedded_repo = 0;
+	}
+
+	strbuf_release(&name);
+}
+
 static int add_files(struct dir_struct *dir, int flags)
 {
 	int i, exit_status = 0;
@@ -308,12 +350,14 @@ static int add_files(struct dir_struct *dir, int flags)
 		exit_status = 1;
 	}
 
-	for (i = 0; i < dir->nr; i++)
+	for (i = 0; i < dir->nr; i++) {
+		check_embedded_repo(dir->entries[i]->name);
 		if (add_file_to_index(&the_index, dir->entries[i]->name, flags)) {
 			if (!ignore_add_errors)
 				die(_("adding files failed"));
 			exit_status = 1;
 		}
+	}
 	return exit_status;
 }
 

git-submodule.sh

@@ -213,7 +213,8 @@ cmd_add()
 		die "$(eval_gettext "'\$sm_path' already exists in the index and is not a submodule")"
 	fi
 
-	if test -z "$force" && ! git add --dry-run --ignore-missing "$sm_path" > /dev/null 2>&1
+	if test -z "$force" &&
+		! git add --dry-run --ignore-missing --no-warn-embedded-repo "$sm_path" > /dev/null 2>&1
 	then
 		eval_gettextln "The following path is ignored by one of your .gitignore files:
 \$sm_path
@@ -267,7 +268,7 @@ or you are unsure what this means choose another name with the '--name' option."
 	fi
 	git config submodule."$sm_name".url "$realrepo"
 
-	git add $force "$sm_path" ||
+	git add --no-warn-embedded-repo $force "$sm_path" ||
 	die "$(eval_gettext "Failed to add submodule '\$sm_path'")"
 
 	git config -f .gitmodules submodule."$sm_name".path "$sm_path" &&

t/t4041-diff-submodule-option.sh

@@ -430,9 +430,11 @@ test_expect_success 'deleted submodule' '
 	test_cmp expected actual
 '
 
-test_create_repo sm2 &&
-head7=$(add_file sm2 foo8 foo9) &&
-git add sm2
+test_expect_success 'create second submodule' '
+	test_create_repo sm2 &&
+	head7=$(add_file sm2 foo8 foo9) &&
+	git add sm2
+'
 
 test_expect_success 'multiple submodules' '
 	git diff-index -p --submodule=log HEAD >actual &&

t/t4060-diff-submodule-option-diff-format.sh

@@ -643,9 +643,11 @@ test_expect_success 'deleted submodule' '
 	test_cmp expected actual
 '
 
-test_create_repo sm2 &&
-head7=$(add_file sm2 foo8 foo9) &&
-git add sm2
+test_expect_success 'create second submodule' '
+	test_create_repo sm2 &&
+	head7=$(add_file sm2 foo8 foo9) &&
+	git add sm2
+'
 
 test_expect_success 'multiple submodules' '
 	git diff-index -p --submodule=diff HEAD >actual &&

t/t7401-submodule-summary.sh

@@ -241,9 +241,11 @@ EOF
 	test_cmp expected actual
 "
 
-test_create_repo sm2 &&
-head7=$(add_file sm2 foo8 foo9) &&
-git add sm2
+test_expect_success 'create second submodule' '
+	test_create_repo sm2 &&
+	head7=$(add_file sm2 foo8 foo9) &&
+	git add sm2
+'
 
 test_expect_success 'multiple submodules' "
 	git submodule summary >actual &&

t/t7414-submodule-mistakes.sh

@@ -0,0 +1,37 @@
+#!/bin/sh
+
+test_description='handling of common mistakes people may make with submodules'
+. ./test-lib.sh
+
+test_expect_success 'create embedded repository' '
+	git init embed &&
+	test_commit -C embed one
+'
+
+test_expect_success 'git-add on embedded repository warns' '
+	test_when_finished "git rm --cached -f embed" &&
+	git add embed 2>stderr &&
+	test_i18ngrep warning stderr
+'
+
+test_expect_success '--no-warn-embedded-repo suppresses warning' '
+	test_when_finished "git rm --cached -f embed" &&
+	git add --no-warn-embedded-repo embed 2>stderr &&
+	test_i18ngrep ! warning stderr
+'
+
+test_expect_success 'no warning when updating entry' '
+	test_when_finished "git rm --cached -f embed" &&
+	git add embed &&
+	git -C embed commit --allow-empty -m two &&
+	git add embed 2>stderr &&
+	test_i18ngrep ! warning stderr
+'
+
+test_expect_success 'submodule add does not warn' '
+	test_when_finished "git rm -rf submodule .gitmodules" &&
+	git submodule add ./embed submodule 2>stderr &&
+	test_i18ngrep ! warning stderr
+'
+
+test_done