ie_match_stat(): do not ignore skip-worktree bit with CE_MATCH_IGNORE_VALID

Previously CE_MATCH_IGNORE_VALID flag is used by both valid and
skip-worktree bits. While the two bits have similar behaviour, sharing
this flag means "git update-index --really-refresh" will ignore
skip-worktree while it should not. Instead another flag is
introduced to ignore skip-worktree bit, CE_MATCH_IGNORE_VALID only
applies to valid bit.

Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>

builtin-apply.c

@@ -2505,7 +2505,7 @@ static int verify_index_match(struct cache_entry *ce, struct stat *st)
 			return -1;
 		return 0;
 	}
-	return ce_match_stat(ce, st, CE_MATCH_IGNORE_VALID);
+	return ce_match_stat(ce, st, CE_MATCH_IGNORE_VALID|CE_MATCH_IGNORE_SKIP_WORKTREE);
 }
 
 static int check_preimage(struct patch *patch, struct cache_entry **ce, struct stat *st)

cache.h

@@ -464,7 +464,9 @@ extern int index_name_is_other(const struct index_state *, const char *, int);
 /* do stat comparison even if CE_VALID is true */
 #define CE_MATCH_IGNORE_VALID		01
 /* do not check the contents but report dirty on racily-clean entries */
-#define CE_MATCH_RACY_IS_DIRTY	02
+#define CE_MATCH_RACY_IS_DIRTY		02
+/* do stat comparison even if CE_SKIP_WORKTREE is true */
+#define CE_MATCH_IGNORE_SKIP_WORKTREE	04
 extern int ie_match_stat(const struct index_state *, struct cache_entry *, struct stat *, unsigned int);
 extern int ie_modified(const struct index_state *, struct cache_entry *, struct stat *, unsigned int);
 

entry.c

@@ -202,7 +202,7 @@ int checkout_entry(struct cache_entry *ce, const struct checkout *state, char *t
 	len += ce_namelen(ce);
 
 	if (!check_path(path, len, &st)) {
-		unsigned changed = ce_match_stat(ce, &st, CE_MATCH_IGNORE_VALID);
+		unsigned changed = ce_match_stat(ce, &st, CE_MATCH_IGNORE_VALID|CE_MATCH_IGNORE_SKIP_WORKTREE);
 		if (!changed)
 			return 0;
 		if (!state->force) {

read-cache.c

@@ -259,13 +259,18 @@ int ie_match_stat(const struct index_state *istate,
 {
 	unsigned int changed;
 	int ignore_valid = options & CE_MATCH_IGNORE_VALID;
+	int ignore_skip_worktree = options & CE_MATCH_IGNORE_SKIP_WORKTREE;
 	int assume_racy_is_modified = options & CE_MATCH_RACY_IS_DIRTY;
 
 	/*
 	 * If it's marked as always valid in the index, it's
 	 * valid whatever the checked-out copy says.
+	 *
+	 * skip-worktree has the same effect with higher precedence
 	 */
-	if (!ignore_valid && ((ce->ce_flags & CE_VALID) || ce_skip_worktree(ce)))
+	if (!ignore_skip_worktree && ce_skip_worktree(ce))
+		return 0;
+	if (!ignore_valid && (ce->ce_flags & CE_VALID))
 		return 0;
 
 	/*
@@ -564,7 +569,7 @@ int add_to_index(struct index_state *istate, const char *path, struct stat *st,
 	int size, namelen, was_same;
 	mode_t st_mode = st->st_mode;
 	struct cache_entry *ce, *alias;
-	unsigned ce_option = CE_MATCH_IGNORE_VALID|CE_MATCH_RACY_IS_DIRTY;
+	unsigned ce_option = CE_MATCH_IGNORE_VALID|CE_MATCH_IGNORE_SKIP_WORKTREE|CE_MATCH_RACY_IS_DIRTY;
 	int verbose = flags & (ADD_CACHE_VERBOSE | ADD_CACHE_PRETEND);
 	int pretend = flags & ADD_CACHE_PRETEND;
 	int intent_only = flags & ADD_CACHE_INTENT;
@@ -1000,11 +1005,21 @@ static struct cache_entry *refresh_cache_ent(struct index_state *istate,
 	struct cache_entry *updated;
 	int changed, size;
 	int ignore_valid = options & CE_MATCH_IGNORE_VALID;
+	int ignore_skip_worktree = options & CE_MATCH_IGNORE_SKIP_WORKTREE;
 
 	if (ce_uptodate(ce))
 		return ce;
 
-	if (!ignore_valid && ((ce->ce_flags & CE_VALID) || ce_skip_worktree(ce))) {
+	/*
+	 * CE_VALID or CE_SKIP_WORKTREE means the user promised us
+	 * that the change to the work tree does not matter and told
+	 * us not to worry.
+	 */
+	if (!ignore_skip_worktree && ce_skip_worktree(ce)) {
+		ce_mark_uptodate(ce);
+		return ce;
+	}
+	if (!ignore_valid && (ce->ce_flags & CE_VALID)) {
 		ce_mark_uptodate(ce);
 		return ce;
 	}

unpack-trees.c

@@ -569,7 +569,7 @@ static int verify_uptodate_1(struct cache_entry *ce,
 		return 0;
 
 	if (!lstat(ce->name, &st)) {
-		unsigned changed = ie_match_stat(o->src_index, ce, &st, CE_MATCH_IGNORE_VALID);
+		unsigned changed = ie_match_stat(o->src_index, ce, &st, CE_MATCH_IGNORE_VALID|CE_MATCH_IGNORE_SKIP_WORKTREE);
 		if (!changed)
 			return 0;
 		/*
@@ -701,7 +701,7 @@ static int icase_exists(struct unpack_trees_options *o, struct cache_entry *dst,
 	struct cache_entry *src;
 
 	src = index_name_exists(o->src_index, dst->name, ce_namelen(dst), 1);
-	return src && !ie_match_stat(o->src_index, src, st, CE_MATCH_IGNORE_VALID);
+	return src && !ie_match_stat(o->src_index, src, st, CE_MATCH_IGNORE_VALID|CE_MATCH_IGNORE_SKIP_WORKTREE);
 }
 
 /*
@@ -1152,7 +1152,7 @@ int oneway_merge(struct cache_entry **src, struct unpack_trees_options *o)
 		if (o->reset && !ce_uptodate(old) && !ce_skip_worktree(old)) {
 			struct stat st;
 			if (lstat(old->name, &st) ||
-			    ie_match_stat(o->src_index, old, &st, CE_MATCH_IGNORE_VALID))
+			    ie_match_stat(o->src_index, old, &st, CE_MATCH_IGNORE_VALID|CE_MATCH_IGNORE_SKIP_WORKTREE))
 				update |= CE_UPDATE;
 		}
 		add_entry(o, old, update, 0);