Teach Git to respect skip-worktree bit (writing part)

This part is mainly to remove CE_VALID shortcuts (and as a
consequence, ce_uptodate() shortcuts as it may be turned on by
CE_VALID) in writing code path if skip-worktree is used. Various tests
are added to avoid future breakages.

Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>

t/t7012-skip-worktree-writing.sh

@@ -0,0 +1,146 @@
+#!/bin/sh
+#
+# Copyright (c) 2008 Nguyễn Thái Ngọc Duy
+#
+
+test_description='test worktree writing operations when skip-worktree is used'
+
+. ./test-lib.sh
+
+test_expect_success 'setup' '
+	test_commit init &&
+	echo modified >> init.t &&
+	touch added &&
+	git add init.t added &&
+	git commit -m "modified and added" &&
+	git tag top
+'
+
+test_expect_success 'read-tree updates worktree, absent case' '
+	git checkout -f top &&
+	git update-index --skip-worktree init.t &&
+	rm init.t &&
+	git read-tree -m -u HEAD^ &&
+	echo init > expected &&
+	test_cmp expected init.t
+'
+
+test_expect_success 'read-tree updates worktree, dirty case' '
+	git checkout -f top &&
+	git update-index --skip-worktree init.t &&
+	echo dirty >> init.t &&
+	test_must_fail git read-tree -m -u HEAD^ &&
+	grep -q dirty init.t &&
+	test "$(git ls-files -t init.t)" = "S init.t" &&
+	git update-index --no-skip-worktree init.t
+'
+
+test_expect_success 'read-tree removes worktree, absent case' '
+	git checkout -f top &&
+	git update-index --skip-worktree added &&
+	rm added &&
+	git read-tree -m -u HEAD^ &&
+	test ! -f added
+'
+
+test_expect_success 'read-tree removes worktree, dirty case' '
+	git checkout -f top &&
+	git update-index --skip-worktree added &&
+	echo dirty >> added &&
+	test_must_fail git read-tree -m -u HEAD^ &&
+	grep -q dirty added &&
+	test "$(git ls-files -t added)" = "S added" &&
+	git update-index --no-skip-worktree added
+'
+
+NULL_SHA1=e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
+ZERO_SHA0=0000000000000000000000000000000000000000
+setup_absent() {
+	test -f 1 && rm 1
+	git update-index --remove 1 &&
+	git update-index --add --cacheinfo 100644 $NULL_SHA1 1 &&
+	git update-index --skip-worktree 1
+}
+
+test_absent() {
+	echo "100644 $NULL_SHA1 0	1" > expected &&
+	git ls-files --stage 1 > result &&
+	test_cmp expected result &&
+	test ! -f 1
+}
+
+setup_dirty() {
+	git update-index --force-remove 1 &&
+	echo dirty > 1 &&
+	git update-index --add --cacheinfo 100644 $NULL_SHA1 1 &&
+	git update-index --skip-worktree 1
+}
+
+test_dirty() {
+	echo "100644 $NULL_SHA1 0	1" > expected &&
+	git ls-files --stage 1 > result &&
+	test_cmp expected result &&
+	echo dirty > expected
+	test_cmp expected 1
+}
+
+cat >expected <<EOF
+S 1
+H 2
+H init.t
+S sub/1
+H sub/2
+EOF
+
+test_expect_success 'index setup' '
+	git checkout -f init &&
+	mkdir sub &&
+	touch ./1 ./2 sub/1 sub/2 &&
+	git add 1 2 sub/1 sub/2 &&
+	git update-index --skip-worktree 1 sub/1 &&
+	git ls-files -t > result &&
+	test_cmp expected result
+'
+
+test_expect_success 'git-add ignores worktree content' '
+	setup_absent &&
+	git add 1 &&
+	test_absent
+'
+
+test_expect_success 'git-add ignores worktree content' '
+	setup_dirty &&
+	git add 1 &&
+	test_dirty
+'
+
+test_expect_success 'git-rm fails if worktree is dirty' '
+	setup_dirty &&
+	test_must_fail git rm 1 &&
+	test_dirty
+'
+
+cat >expected <<EOF
+Would remove expected
+Would remove result
+EOF
+test_expect_success 'git-clean, absent case' '
+	setup_absent &&
+	git clean -n > result &&
+	test_cmp expected result
+'
+
+test_expect_success 'git-clean, dirty case' '
+	setup_dirty &&
+	git clean -n > result &&
+	test_cmp expected result
+'
+
+test_expect_failure 'git-apply adds file' false
+test_expect_failure 'git-apply updates file' false
+test_expect_failure 'git-apply removes file' false
+test_expect_failure 'git-mv to skip-worktree' false
+test_expect_failure 'git-mv from skip-worktree' false
+test_expect_failure 'git-checkout' false
+
+test_done

unpack-trees.c

@@ -450,7 +450,7 @@ static int verify_uptodate(struct cache_entry *ce,
 {
 	struct stat st;
 
-	if (o->index_only || o->reset || ce_uptodate(ce))
+	if (o->index_only || (!ce_skip_worktree(ce) && (o->reset || ce_uptodate(ce))))
 		return 0;
 
 	if (!lstat(ce->name, &st)) {
@@ -1004,7 +1004,7 @@ int oneway_merge(struct cache_entry **src, struct unpack_trees_options *o)
 
 	if (old && same(old, a)) {
 		int update = 0;
-		if (o->reset && !ce_uptodate(old)) {
+		if (o->reset && !ce_uptodate(old) && !ce_skip_worktree(old)) {
 			struct stat st;
 			if (lstat(old->name, &st) ||
 			    ie_match_stat(o->src_index, old, &st, CE_MATCH_IGNORE_VALID))